2007 fz1 shuts off in gear

I have situation! So my 2007 yamaha fz1 will not start in gear, and only runs in nuetral. The bike will run in 1St gear on center stand only. I tested the side stand switch in diagnosis, and it works fine. When the stands are down and I start it in gear it pulls me forward. Not sure what happened over the winter, but my bike was running fine! I need help. All I see is side stand switch issues. When the bike is turned off, it will not roll with the clutch handle pulled in!
 
Sounds like the clutch cable needs to be adjusted? When you pull in the clutch, does it shift into gears smoothly? I know first gear will clunk but what about 2nd, 3rd…
 
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